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Tomato SNP: OPA Genotype Information


Tomato SNP OPA Genotype Data
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Variety Market class SC_S_Sl_00001 SC_S_Sl_00002 SC_S_Sl_00003 SC_S_Sl_00004 SC_S_Sl_00005 SC_S_Sl_00006 SC_S_Sl_00007 SC_S_Sl_00008 SC_S_Sl_00009 SC_S_Sl_00010 SC_S_Sl_00011 SC_S_Sl_00012 SC_S_Sl_00013 SC_S_Sl_00014 SC_S_Sl_00015 SC_S_Sl_00016 SC_S_Sl_00017 SC_S_Sl_00018 SC_S_Sl_00019 SC_S_Sl_00020 SC_S_Sl_00021 SC_S_Sl_00022 SC_S_Sl_00023 SC_S_Sl_00024 SC_S_Sl_00025 SC_S_Sl_00026 SC_S_Sl_00027 SC_S_Sl_00028 SC_S_Sl_00029 SC_S_Sl_00030 SC_S_Sl_00031 SC_S_Sl_00032 SC_S_Sl_00033 SC_S_Sl_00034 SC_S_Sl_00035 SC_S_Sl_00036 SC_S_Sl_00037 SC_S_Sl_00038 SC_S_Sl_00039 SC_S_Sl_00040 SC_S_Sl_00041 SC_S_Sl_00042 SC_S_Sl_00043 SC_S_Sl_00044 SC_S_Sl_00045 SC_S_Sl_00046 SC_S_Sl_00047 SC_S_Sl_00048
S1 Freshmarket A C A G G C C G A G A G T A A G G G G A T C G C T A C T A G A A G G T A A T G A A C A G G G G A
S10 Freshmarket A C A G G A C A A G G G T A G G G G G A T A G C T A C T A G A A G G T A A T G A A C T G G G G A
S11 Freshmarket A A A G A C C A A G G G T A G G G A A A T A G C T - C T G A A G G G A A A T A A A C T G G G G A
S12 Freshmarket A C A G "A,G" C C G A G G G T A A G G G G G T A G C T A C T A G A A G G T A A A G A A C T G G G G A
S2 Freshmarket A A A G A C C G A G G G T A G G G A G A T A G C T "A,G" C T A A A G G G A A A T A A A C T G G G G T
S3 Freshmarket A C A G "A,G" C C A A G G G T A A G G G G G T "A,C" "A,G" C T A C T "A,G" G A A "A,G" G T A A A G A A C "A,T" G "A,G" G G "A,T"
S4 Freshmarket A C A G G C C A A G A G T "A,T" G G G G A A A C A C T G C T "A,G" G A G A G A A A A A A A C A G "A,G" G G T
S5 Freshmarket C C C G A C C G A A G G T T G G G G G A T A G C A A C T "A,G" G G A G G T A G A G A A C T G G G G A
S6 Freshmarket A C A G G C C G A G G G T A A G G G G G T C G C T A C T G G A A G G T A A A G A A C A G G G G A
S7 Freshmarket A C A G "A,G" "A,C" C "A,G" A G G G T A G G G G "A,G" "A,G" T A G C T "A,G" C T "A,G" G A "A,G" G G A A A "A,T" A G A C T G G G G A
S8 Freshmarket A C A G G C C G A G A G T A A G G G G A T C G C T A C T G G A A G G T A A T G G A C A G G G G A
S9 Freshmarket A "A,C" "A,C" G "A,G" C C A G G "A,G" "A,G" T "A,T" A G G "A,G" G A T "A,C" "A,G" G "A,T" A "C,G" T G "A,G" A A "A,G" G T "A,G" A A G A "A,G" C "A,T" G G "A,G" G "A,T"
Fla.7600 Freshmarket A C A G G C C G A G A G T A A G G G G A T C G C T A C T A G A A G G T A A T G G A C A G G G G A
Campbell_28 Freshmarket A C A G A C C G A G G G T A G G G G G G T A G C T G C T G G A G G G A A A A A G A C T G G G G A
Fla.7060 Freshmarket A C A G A C C G A G G G T A A G G G G A T A G C T A C T A G A A G G T A A T G A A C T G G G G A
Fla.7547 Freshmarket A C A G G C C G A G A G T A A G G G G A T C G C T A C T A G A A G G T A A T G A A C A G G G G A
Fla.7771 Freshmarket A C A G G C C G A G A G T A A G G G G G T C G C T A C T G G A A G G T A A A G A A C A G G G G A
Fla.7775 Freshmarket A C A G G C C G A G A G T A A G G G G A T C G C T A C T G G A A G G T A A T G G A C A G G G G A
Fla.8233 Freshmarket A C A G G C C A A G A G T A A G G G G A T C G C T A C T G G A A "A,G" G T A A T G G A C A G G G G A
Floradade Freshmarket A C A G G C C G A G A G T A A G G G G A T C G C T A C T G G A A G G A A A T G A A C A G G G G A
NC23E_2 Freshmarket A C A A A C C G A G A G T A A A G G G A A C G C T A C T G G A A G G T A A T G A A C A G G G G A
NC353_1 Freshmarket A A A G G C C G G G G A T A A G A A G A T A A G T A G T A A A A A G T A A "A,T" G A A C T G A "A,G" A T
NC84173 Freshmarket A C A G "A,G" C C G A G G G T A A G G G G A T A G C T A C T A G A A G G T A A T G A A C "A,T" G G G A A
NC98248 Freshmarket A C A G G C C A A G G G T A A G "A,G" G G "A,G" T A G C T A C T G G A A G G T A A "A,T" G A A C T G G G G A
NC994713 Freshmarket C C "A,C" G G C "A,C" A A "A,G" G G "A,T" "A,T" A G G G G A T A G C A A C T "A,G" G G A G "A,G" T A G T G A A A T G G G G A
NCEBR2 Freshmarket A C A A A C C G A G G G T A A A G G G A A A G C T G C T G G A G G G A A A T A A A C T G G G G A
Ohio MR13 Freshmarket A C A G A C C G A G G G T A G G G G G G T A G C T G C T G G A G G G A A A A A A A C T G G G G A
Ohio11 Freshmarket A C A G A C C G A G G G T A A G G G A A T A G C T G C T G G A G G G A A A T A A A C T G G G G A
RioGrande Freshmarket C C C A G C A A A A A G A T A G G G G A A C G C A A C T G G G A G A T A G T G A A C A A G G A A
Tropic Freshmarket A C A G A C C G A G G G T A A G G G G A T A G C T G C T G G A G G G A A A T A A A C T G G G G A
LA1216 Latin American cultivar C C C G A C C A G G G A T A G A A G A G T A G C A "A,G" C T G G A G G G A A G T A A A C T G G G G T
LA2256 Latin American cultivar A C A G A C C A A A G G A A G A A G G G T A G C T G C T G G A G G G A G A A A G G C A A G G G A
LA2281 Latin American cultivar A C A G A C C A G G G A T A G G A G A A T A G C T G C T G G A G G G A A A T A G A C T G G G G A
OH03_6437 Processing A C A G G C C A A G A G T A G G G G G A T C G C T A C T G G A A G G T A A T G G A C A "A,G" G G A A
OH03_7463 Processing C A C G G C "A,C" G A A A G A "A,T" A G G A G A T C A C A A C T G G G A A "A,G" T A G T G G A C A G A G A T
OH06_8145 Processing C A C G G C A A A A A G A T A G G A G A T C A C A A C T G G G A A A T A G T G G A C A G A G A T
Compbell_1327 Processing A C A G A C C G A G G G T A G G G G G A T A G C T G C T A G A G G G A A A T A A A C T G G G G A
E3259 Processing A C A G G C "A,C" A A G A G A A A G G G G A T C G C T A C T G G A A G "A,G" A A A T G G A C A G G G A A
E6203 Processing C A C A G C A G A A A G A T G G G A G A A C A C A A C A A A G A A A T G G T G A G A A G A G A T
H1706 Processing "A,C" C "A,C" G "A,G" C "A,C" "A,G" G G G "A,G" - A A A A G G G T A "A,G" G "A,T" "A,G" "C,G" T G G "A,G" "A,G" "A,G" "A,G" "A,T" "A,G" "A,G" A "A,G" G "A,G" C "A,T" "A,G" "A,G" "A,G" "A,G" "A,T"
H722 Processing A C A G G C C A A G A G T A A G G G G A T C G C T A C T G G A A G G T A A T G A A C A A G G A A
Hunt100 Processing A "A,C" A G A C C "A,G" G G G "A,G" T A G G A "A,G" G G T A A C T G C T "A,G" G A G A G A "A,G" A A A A "A,G" "A,C" T G A "A,G" G T
M82 Processing C C C G G C C G A A A G T T G G G G G G T C G C A A C T A G G A G G T G G A G A G C A G G G A A
OH2641 Processing A C A G G C A G A G A G A A G G G G G A T C G C T A C T G G A A G A T A A T G G A C A G G G A A
OH7536 Processing C A C G G C A A A A G G A T A G G A G A T C G C A A C T G A G A G A T A G T G G A C A G G G A T
OH7814 Processing A C A G G C A A A G A G A A A G G G G A T C G C T A C T G G A A G A T A A T G G A C A G G G G A
OH7870 Processing A C A G G C C G A G A G T A G G G G G A T C G C T A C T A G A A G G T A A T G G A A A G G G A A
OH7983 Processing A C A G G C A A A G A G A A A G G G G A T C G C T A C T G G A A G "A,G" T A A T G G A C A G G G A A
OH8239 Processing C C C G G C A A G A A A A T G G A G G G T C G C A A C T G G G A G A T A G A A A A C T G G "A,G" G A
OH8245 Processing A C A A G C C A A G A G T A G G G G G A A C G C T A C T G G A A G G T A A T G G A C A A G G A A
OH832 Processing C C C G G C A G A A A G A T G G G G G G T C G C A A C T "A,G" G G A G "A,G" T A G A G G A C A G G G A A
OH8383 Processing C C C G G C A A G A A A A T A G G G G A T C G C A A C T G G G A G A T A G T G A A C T G G "A,G" A A
OH8446 Processing A C A G G C C A A G A G T A G G G G G A T C G C T A C T G G A A G G T A A T G A A C A A G G A A
OH8556 Processing A C A G G C A A A G A G A A G G G G G A T C G C T A C T G G A A G G T A A T G G A A A G G G A A
OH86120 Processing A C A G G C A A A G A G A A G G G G G A T C G C T A C T G G A A G "A,G" T A A T G G A C A G G G A A
OH8614 Processing C C C G G A A G A A A G A T A G G G G A T C G C A A C T G G G A G "A,G" T A G T G G A A A G G G A A
OH87160 Processing C A C G G C A A A A A G A T A G G A G A T C A C A A C T G G G A A A T A G T G G A C A G A G A T
OH88119 Processing C A C G G C A A A A A G A T A G G A G A T C A C A A C T G G G A A A T A G T G G A C A G A G A T
OH9241 Processing A C A G G C A "A,G" A G A G A A A G G G G A T C G C T A C T G G A A G "A,G" T A A T G G A C A G G G G A
OH9242 Processing A C A G G C C G A G A G T A G G G G G A T C G C T A C T G G A A G G T A A T G G A A A G G G A A
OH981067 Processing C A C A G A A A A A A G A T G G G A G A A C A C A A C T G G G A A A T G G T G A G C A A A G A T
OH981136 Processing C C C G G A C G A A "A,G" G T "A,T" G G G G G A T C G C A A C T G G G A G G T A G T G A A C A G G G A A
OH981670 Processing C A C A G A A A A A A G A T G G G A G A A C A C A A C T G G G A A A T G G T G A G C A A A G A T
OH987034 Processing C A C G G C "A,C" A A A A G A "A,T" A G G A G A T C A C A A C T G G G A A "A,G" T A G T G G A C A G A G A T
Peto95_43 Processing C A C G G C C G A A A G T "A,T" G G G A G A T C G C A A C A A A G A G G T G G T G A "A,G" C A G G G A A
R996 Processing A C A G G C C A A G A G T A A A G G G A T C G C T A C T G G A A G G T A A T G G A C A G G G G A
R997 Processing C C A G G A A A A G A G A A G A G G G A T C G C T A C T G G G A G A T A A T G G A C A A G G A A
Sun1642 Processing A C A G G C C G A A G G T T A G G G G G T A G C A A C T A G A A G G T G A A G A G C A G G G A A
TA496 Processing C A C A G A A G A A A G A T G G G A G A A C A C A A C A A A G A A A T G G T G A G A A G A G A T
Ha7981 Unimproved A A A G A C C A A G G G T A A G A A G G T A G C T G C T A A A G G G A A A A A G A A T A G G G T
Ha7998 Unimproved A A A G A C C A A G G G T A A G G A G G A A G C T G C T G A A G G G A A A A A G A C T A G G G T
Ailsa_Craig Vintage A C A G A "A,C" C "A,G" A G G G T A A A "A,G" G "A,G" G T A G C T G C T G G A G G G A A A A A "A,G" A A T "A,G" G G G A
Beauty Vintage A C A G A C C G A G G G T A G G G G G G T A G C T G C T G G A G G G A A A A A A A C T G G G G A
Black_Plum Vintage A C A G A A C A A G G G T A A G A G G G T A G C T "A,G" C T G G A G G G A A A A A A A C A A G G G A
Favorite Vintage A C A G A C C "A,G" A G G G T A G G "A,G" G G G T "A,C" G C T G C T "A,G" G A G G G A A A A A "A,G" A "A,C" "A,T" "A,G" G G G A
Globe Vintage A C A G A C C G A G G G T A G G G G A A T A G C T G C T A G A G G G A A A T A A A C T G G G G A
Gold_Ball Vintage A C A G A A C A A G G G T A G G G G G A T A G C T G C T A G A G G G A A A T A A A C T G G G G A
Grushovka Vintage A C A G A C C G A G G G A A G A G G A G T A G C T G C T G G A G G G A A A A A A A A T G G G G A
Marglobe Vintage A A A G A C C G A G G G A A G G G A - "A,G" T A A C T "A,G" C T G G A G A G A A A "A,T" A "A,G" A C T G "A,G" G G T
Moneymaker Vintage A C A G A C C G A G G G A A G A G G A G T A G C T "A,G" C T G G A G G G A A A A A G A C T G G G G A
Opalka Vintage A C A G A A C A A G "A,G" G A A G G A G G A T A G C T A C T G G A G G G A A A T A G A A T A G G G A
Oxheart Vintage A C A G A C C G A G G G T A G G "A,G" G A A T A G C T G C T G G A G G G A A A T A "A,G" A A T G G G G A
Paragon Vintage A C A G A C C "A,G" A G G G A A G G G G G "A,G" T A G C T "A,G" C T "A,G" G A G G G A A A "A,T" A "A,G" A "A,C" T "A,G" G G G A
San_Marzano Vintage A C A G A A C A A G G G T A A G A G G G T A G C T G C T G G A G G G A A A A A A A A T A G G G A
T1693 Vintage A C A G A C C G A G G G T A G A G G G G T A G C T "A,G" C T G G A G G G A A A A A A A C A G G G G A
Walter Vintage A C A G A C C G A G G G T A A G G G G A T A G C T G C T G G A G G G A A A T A A A C T G G G G A
Yellow_Pear Vintage A C A G A A C A A G G G T A A A G G A G T C G C T G C T G G A G G G A A A A A A A C A A G G G A
LA1269 Wild A A C A A C "A,C" G G A G A A "A,T" A G A A G A A A A G A A G T G A A A A "A,G" A A G A G G G C T G A "A,G" G T
LA1547 Wild A A C G A C "A,C" "A,G" G "A,G" G A "A,T" "A,T" G G "A,G" A G A A A A G A A "C,G" T G "A,G" "A,G" G "A,G" "A,G" A "A,G" G "A,T" G G "A,G" C T G "A,G" "A,G" "A,G" T
LA1589 Wild A A C G G C C G G A G A A A A G A A G A A A A G A A C T G A A A A A T A G A G G G C T G A "A,G" A T
LA2184 Wild A A C G A C C A G "A,G" G A A T A G A A G A A A A G A A C T G "A,G" A G A G A A G A G G A C T G "A,G" "A,G" G T
LA0407 Wild "A,C" - A - A - - G A G G - A - - "A,G" A A G A A A A G A A C T - G - G A G T G G A G G A - T G G A A A
LA0716 Wild "A,C" - A - - C - G A G G - A - - A A A G - A A - G A A C T G G - G A G T G G A G G A - T G G A A A
PI114490 Wild C C C G A A A A A A G G A T G A G G A A T A G C A G C T G G G G G A A A G A A G A C T A G G G A
PI128216 Wild C A C A A C A G G A G A A T A G A A G A A A A G A A G T G A G A A A T G G A G G G C T G A "A,G" A T
PI365914 Wild C A C G A C C A A G G A A A G G A A G A A A A G A A C T G G A G G G A A G T G G G C T G G G G T